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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05119.1PFAM: polysaccharide deacetylase; KEGG: ate:Athe_1829 polysaccharide deacetylase. (290 aa)    
Predicted Functional Partners:
ADQ03888.1
PFAM: glycosyl transferase family 2; KEGG: ate:Athe_0452 glycosyl transferase family 2.
 
  
 0.850
ADQ05118.1
Transcriptional repressor, CtsR; PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: ate:Athe_1828 transcriptional repressor, CtsR; Belongs to the CtsR family.
 
     0.569
ADQ03711.1
PFAM: glycosyl transferase family 2; KEGG: ate:Athe_0167 glycosyl transferase family 2.
 
  
 0.547
ADQ03686.1
KEGG: swo:Swol_1120 hypothetical protein.
  
  
 0.487
mcsB
ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in proteins.
       0.425
ADQ05117.1
PFAM: UvrB/UvrC protein; KEGG: ate:Athe_1827 UvrB/UvrC protein.
       0.425
ADQ05115.1
KEGG: ate:Athe_1825 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
       0.413
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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