Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05136.1KEGG: cce:Ccel_2404 hypothetical protein. (900 aa)    
Predicted Functional Partners:
ADQ05379.1
KEGG: ate:Athe_2160 CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
    
 
 0.825
ADQ05137.1
KEGG: csc:Csac_1072 hypothetical protein.
       0.781
ADQ05138.1
KEGG: ate:Athe_1873 hypothetical protein.
       0.748
ADQ05139.1
PFAM: Fimbrial assembly family protein; KEGG: ate:Athe_1874 fimbrial assembly family protein.
       0.734
ADQ05140.1
Manually curated; KEGG: csc:Csac_1069 Tfp pilus assembly protein ATPase PilM-like protein.
       0.653
ADQ05142.1
KEGG: csc:Csac_1067 hypothetical protein.
     
 0.587
ADQ05141.1
KEGG: csc:Csac_1068 hypothetical protein.
       0.550
ADQ05135.1
KEGG: cpf:CPF_0497 von Willebrand factor type A domain-containing protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
       0.526
ADQ04948.1
KEGG: csc:Csac_1700 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.
    
 
 0.496
ADQ05143.1
PFAM: Late competence development protein ComFB; KEGG: csc:Csac_1066 hypothetical protein.
       0.496
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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