STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05138.1KEGG: ate:Athe_1873 hypothetical protein. (420 aa)    
Predicted Functional Partners:
ADQ05140.1
Manually curated; KEGG: csc:Csac_1069 Tfp pilus assembly protein ATPase PilM-like protein.
  
 
 0.945
ADQ05147.1
PFAM: Type II secretion system F domain; KEGG: csc:Csac_1062 type II secretion system protein.
   
 
 0.889
ADQ05149.1
KEGG: csc:Csac_1060 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
 
 0.877
ADQ05139.1
PFAM: Fimbrial assembly family protein; KEGG: ate:Athe_1874 fimbrial assembly family protein.
       0.794
ADQ05137.1
KEGG: csc:Csac_1072 hypothetical protein.
  
  
 0.758
ADQ05136.1
KEGG: cce:Ccel_2404 hypothetical protein.
       0.749
ADQ05144.1
KEGG: csc:Csac_1065 peptidase A24A domain-containing protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV.
     
 0.709
ADQ05142.1
KEGG: csc:Csac_1067 hypothetical protein.
  
  
 0.674
ADQ05143.1
PFAM: Late competence development protein ComFB; KEGG: csc:Csac_1066 hypothetical protein.
       0.638
ADQ05148.1
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: csc:Csac_1061 twitching motility protein; SMART: AAA ATPase.
  
  
 0.636
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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