Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05141.1KEGG: csc:Csac_1068 hypothetical protein. (166 aa)    
Predicted Functional Partners:
ADQ05142.1
KEGG: csc:Csac_1067 hypothetical protein.
       0.781
ADQ05143.1
PFAM: Late competence development protein ComFB; KEGG: csc:Csac_1066 hypothetical protein.
       0.700
ADQ05140.1
Manually curated; KEGG: csc:Csac_1069 Tfp pilus assembly protein ATPase PilM-like protein.
       0.680
ADQ05144.1
KEGG: csc:Csac_1065 peptidase A24A domain-containing protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV.
       0.615
ADQ05138.1
KEGG: ate:Athe_1873 hypothetical protein.
       0.583
ADQ05139.1
PFAM: Fimbrial assembly family protein; KEGG: ate:Athe_1874 fimbrial assembly family protein.
       0.583
ADQ05136.1
KEGG: cce:Ccel_2404 hypothetical protein.
       0.550
ADQ05137.1
KEGG: csc:Csac_1072 hypothetical protein.
       0.550
ADQ05145.1
KEGG: csc:Csac_1064 hypothetical protein.
       0.522
ADQ05146.1
KEGG: csc:Csac_1063 hypothetical protein.
       0.480
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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