Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05146.1KEGG: csc:Csac_1063 hypothetical protein. (140 aa)    
Predicted Functional Partners:
ADQ05145.1
KEGG: csc:Csac_1064 hypothetical protein.
 
  
 
0.973
ADQ05147.1
PFAM: Type II secretion system F domain; KEGG: csc:Csac_1062 type II secretion system protein.
 
  
 0.943
ADQ05149.1
KEGG: csc:Csac_1060 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
 
 
 0.902
ADQ05144.1
KEGG: csc:Csac_1065 peptidase A24A domain-containing protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV.
 
  
 0.829
ADQ05148.1
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: csc:Csac_1061 twitching motility protein; SMART: AAA ATPase.
 
  
 0.801
ADQ05143.1
PFAM: Late competence development protein ComFB; KEGG: csc:Csac_1066 hypothetical protein.
  
    0.677
ADQ03643.1
PFAM: O-antigen polymerase; KEGG: ate:Athe_0051 O-antigen polymerase.
 
   
 0.669
ADQ05140.1
Manually curated; KEGG: csc:Csac_1069 Tfp pilus assembly protein ATPase PilM-like protein.
 
  
 0.653
ADQ05138.1
KEGG: ate:Athe_1873 hypothetical protein.
  
  
 0.536
ADQ05142.1
KEGG: csc:Csac_1067 hypothetical protein.
  
  
 0.536
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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