Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05232.1KEGG: ate:Athe_1972 hypothetical protein. (132 aa)    
Predicted Functional Partners:
ADQ05054.1
PFAM: Sporulation protein YtxC; KEGG: ate:Athe_1765 sporulation protein YtxC.
  
     0.647
ADQ04485.1
PFAM: Protein of unknown function DUF2225; KEGG: ate:Athe_1100 hypothetical protein.
  
    0.542
ADQ05233.1
KEGG: ate:Athe_1973 hypothetical protein.
  
    0.542
ADQ05231.1
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: ate:Athe_1971 xylose isomerase domain protein TIM barrel.
       0.525
ADQ04618.1
KEGG: csc:Csac_1829 hypothetical protein.
  
     0.499
ADQ05143.1
PFAM: Late competence development protein ComFB; KEGG: csc:Csac_1066 hypothetical protein.
  
     0.454
ADQ04035.1
PFAM: helix-turn-helix domain protein; KEGG: ate:Athe_0586 hypothetical protein.
  
     0.411
ADQ04677.1
PFAM: HutP family protein; KEGG: ate:Athe_1323 HutP family protein.
  
     0.400
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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