Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05362.1KEGG: ate:Athe_2143 protein of unknown function DUF342; manually curated; PFAM: protein of unknown function DUF342. (461 aa)    
Predicted Functional Partners:
ADQ05366.1
PFAM: CheC domain protein; KEGG: ate:Athe_2147 CheC, inhibitor of MCP methylation.
 
    0.838
ADQ05369.1
PFAM: type IV pilus assembly PilZ; KEGG: ate:Athe_2150 type IV pilus assembly PilZ.
 
    0.835
ADQ05363.1
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.827
ADQ05380.1
KEGG: ate:Athe_2161 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein.
 
     0.800
ADQ05371.1
TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: ate:Athe_2152 GTP-binding signal recognition particle SRP54 G-domain protein; SMART: AAA ATPase.
 
   
 0.797
ADQ05353.1
PFAM: CheC domain protein; KEGG: ate:Athe_2134 CheC domain protein.
 
     0.775
cheD
CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
     0.770
ADQ04966.1
TIGRFAM: Flagellar operon protein YvyF; KEGG: ate:Athe_1678 hypothetical protein.
 
     0.764
ADQ05390.1
PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: ate:Athe_2171 H+-transporting two-sector ATPase, E subunit.
 
     0.738
ADQ05382.1
PFAM: flagellar FlbD family protein; KEGG: ate:Athe_2163 flagellar FlbD family protein.
 
   
 0.721
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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