STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05438.1PFAM: class II aldolase/adducin family protein; KEGG: csc:Csac_0723 L-ribulose-5-phosphate 4-epimerase. (214 aa)    
Predicted Functional Partners:
araB
L-ribulokinase; KEGG: ate:Athe_2229 L-ribulokinase; TIGRFAM: L-ribulokinase; PFAM: Carbohydrate kinase, FGGY-like.
 
 
 0.993
xylB
Xylulokinase; KEGG: ate:Athe_0567 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like.
  
 
 0.954
xylB-2
PFAM: Carbohydrate kinase, FGGY-like; KEGG: ate:Athe_2391 carbohydrate kinase FGGY.
  
 
 0.954
ADQ04431.1
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: ate:Athe_1047 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase.
    
 0.949
ADQ05575.1
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: csc:Csac_0598 xylose isomerase domain-containing protein.
  
 
  0.905
uxaC
KEGG: csc:Csac_1949 glucuronate isomerase; PFAM: Glucuronate isomerase.
     
 0.860
ADQ05439.1
Transcriptional regulator, GntR family with LacI sensor; KEGG: csc:Csac_0722 regulatory protein GntR, HTH; PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein GntR HTH.
 
   
 0.853
ADQ05245.1
PFAM: glycoside hydrolase family 4; KEGG: ate:Athe_2028 glycoside hydrolase family 4.
   
 
 0.803
ADQ04224.1
PFAM: 3-dehydroquinate synthase; KEGG: csc:Csac_0948 glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.571
mtnA
Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
  
 0.502
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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