Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADQ05561.1KEGG: S23 ribosomal protein. (132 aa)    
Predicted Functional Partners:
ADQ05149.1
KEGG: csc:Csac_1060 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
 
 0.713
ADQ05147.1
PFAM: Type II secretion system F domain; KEGG: csc:Csac_1062 type II secretion system protein.
  
  
 0.698
ADQ05539.1
PFAM: Integrase catalytic region; KEGG: tit:Thit_1876 integrase catalytic region.
  
     0.637
ADQ05538.1
KEGG: tit:Thit_1875 Tn7-like transposition protein C.
  
     0.634
ADQ05540.1
PFAM: TnsA endonuclease; KEGG: tit:Thit_1877 TnsA endonuclease.
  
     0.629
ADQ05537.1
KEGG: tit:Thit_1874 Tn7-like transposition protein D.
  
     0.626
ADQ05183.1
KEGG: ate:Athe_1921 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
 
  
 0.595
ADQ05560.1
KEGG: chy:CHY_2659 hypothetical protein.
       0.521
ADQ05401.1
KEGG: ate:Athe_2182 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.
 
  
 0.491
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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