Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADQ05586.1KEGG: ate:Athe_2346 TraX family protein. (234 aa)    
Predicted Functional Partners:
ADQ05587.1
Hypothetical protein; Manually curated; KEGG: ate:Athe_2347 hypothetical protein.
 
     0.608
ADQ05276.1
KEGG: ate:Athe_2056 putative sensor with HAMP domain.
  
     0.589
ADQ05582.1
PFAM: S-layer domain-containing protein; KEGG: ate:Athe_2342 S-layer domain protein.
 
     0.583
ADQ05583.1
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.518
ADQ05584.1
PFAM: protein of unknown function DUF86; KEGG: ate:Athe_2344 protein of unknown function DUF86.
       0.518
ADQ05585.1
PFAM: DNA polymerase beta domain protein region; KEGG: ate:Athe_2345 DNA polymerase beta domain protein region.
       0.518
ADQ05581.1
PFAM: S-layer domain-containing protein; KEGG: ate:Athe_2341 S-layer domain protein.
 
     0.467
ADQ05588.1
KEGG: ate:Athe_2348 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.458
ADQ04270.1
PFAM: extracellular solute-binding protein family 1; KEGG: ate:Athe_0849 extracellular solute-binding protein family 1.
  
     0.412
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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