Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05722.1KEGG: afl:Aflv_1210 hypothetical protein. (327 aa)    
Predicted Functional Partners:
ADQ03888.1
PFAM: glycosyl transferase family 2; KEGG: ate:Athe_0452 glycosyl transferase family 2.
 
   
 0.623
ADQ03686.1
KEGG: swo:Swol_1120 hypothetical protein.
 
   
 0.603
ADQ05619.1
KEGG: tit:Thit_1727 pectate disaccharide-lyase; PFAM: S-layer domain-containing protein; Ig domain protein.
   
   0.501
ADQ05623.1
PFAM: glycoside hydrolase family 28; KEGG: ate:Athe_2380 galacturan 1,4-alpha-galacturonidase; Belongs to the glycosyl hydrolase 28 family.
   
   0.501
ADQ05723.1
KEGG: ate:Athe_2712 protein of unknown function DUF114.
  
    0.453
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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