Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05729.1KEGG: ate:Athe_2729 hypothetical protein. (69 aa)    
Predicted Functional Partners:
ADQ05730.1
PFAM: protein of unknown function DUF1659; KEGG: ate:Athe_2730 protein of unknown function DUF1659.
       0.676
ADQ05728.1
KEGG: ate:Athe_2728 hypothetical protein.
 
     0.664
ADQ04734.1
KEGG: ate:Athe_1389 protein of unknown function DUF1867.
  
     0.591
ADQ05727.1
KEGG: ate:Athe_2727 hypothetical protein.
 
     0.589
ADQ05415.1
PFAM: tRNA pseudouridine synthase D TruD; KEGG: ate:Athe_2197 tRNA pseudouridine synthase D TruD.
  
     0.537
ADQ04674.1
KEGG: ate:Athe_1320 hypothetical protein.
  
     0.515
ADQ04563.1
KEGG: ate:Athe_1209 hypothetical protein.
  
     0.456
ADQ03641.1
PFAM: protein of unknown function DUF95 transmembrane; KEGG: ate:Athe_0049 protein of unknown function DUF95 transmembrane.
  
     0.444
ADQ04400.1
KEGG: chy:CHY_1672 putative prophage LambdaCh01, scaffold protein.
  
     0.442
ADQ04035.1
PFAM: helix-turn-helix domain protein; KEGG: ate:Athe_0586 hypothetical protein.
  
     0.441
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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