STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acnAconitase; Protein synonym:aconitate hydratase. (932 aa)    
Predicted Functional Partners:
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
 0.993
ROP_50540
Citrate synthase family protein; Belongs to the citrate synthase family.
 
 0.990
gltA
Citrate synthase; Belongs to the citrate synthase family.
 
 0.989
icd-2
Isocitrate dehydrogenase; Protein synonym:oxalosuccinate decarboxylase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.979
icd
Isocitrate dehydrogenase; Protein synonym:oxalosuccinate decarboxylase; Belongs to the monomeric-type IDH family.
  
 
 0.941
aceA
Isocitrate lyase.
  
 
 0.926
acn-2
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 
0.902
ROP_21110
Putative aconitase; Protein synonym:aconitate hydratase.
     
 
0.900
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.803
ROP_00650
Carboxymuconolactone decarboxylase family protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
     
 0.796
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.