STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_02130Hypothetical protein. (151 aa)    
Predicted Functional Partners:
otsA
Putative alpha,alpha-trehalose-phosphate synthase; Protein synonym:trehalose-6-phosphate synthase.
  
    0.815
ROP_02170
Putative anti-sigma factor.
  
 
 0.750
ROP_18360
Putative anti-sigma factor.
  
 
 0.750
ROP_58150
Hypothetical protein.
  
  
 0.663
ROP_58360
Hypothetical membrane protein.
  
  
 0.618
ROP_01490
Hypothetical protein.
  
    0.583
fbiC
Protein synonym:FO synthase.
  
    0.583
ROP_02160
RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
  
 
 0.548
sigF
RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.
  
 
 0.548
ROP_48230
RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
  
 
 0.548
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.