Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROP_02470Hypothetical protein. (257 aa)    
Predicted Functional Partners:
ROP_02460
Putative methyltransferase.
     0.997
ROP_02480
Hypothetical protein.
     0.991
ROP_02490
Putative glycosyltransferase.
 
  
 0.975
ROP_02510
Oxidoreductase FAD-binding subunit.
 
     0.631
ROP_02520
Oxidoreductase molybdopterin-binding subunit.
 
     0.608
ROP_02500
Oxidoreductase iron-sulfur subunit.
       0.546
ROP_34610
tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.445
ROP_41210
Hypothetical membrane protein.
 
     0.440
ROP_23770
Hypothetical protein.
  
     0.410
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
    0.402
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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