Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ROP_02520Oxidoreductase molybdopterin-binding subunit. (698 aa)    
Predicted Functional Partners:
ROP_02500
Oxidoreductase iron-sulfur subunit.
 0.999
ROP_02510
Oxidoreductase FAD-binding subunit.
 
 0.999
ROP_50440
Carbon monoxide dehydrogenase small subunit; Protein synonym:CO dehydrogenase.
 
 0.953
ndhB
Putative nicotine dehydrogenase small subunit.
 
 0.925
guaD
Guanine deaminase.
  
 
 0.916
ROP_12690
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
    
 0.910
ROP_44290
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
    
 0.910
ROP_52780
Carbon monoxide dehydrogenase small subunit; Protein synonym:CO dehydrogenase.
 
 0.906
ROP_08120
Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
    
  0.904
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Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.
    
  0.904
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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