Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ROP_03230RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (349 aa)    
Predicted Functional Partners:
ROP_03210
Hypothetical protein.
  
 
 0.724
ROP_03240
Putative S12 family peptidase; Fragment.
  
  
 0.660
ROP_03250
Putative S12 family peptidase; Fragment.
  
  
 0.660
ROP_29250
Hypothetical protein.
  
 
 0.535
ROP_03220
Hypothetical protein.
       0.524
ROP_03260
Putative decarboxylase.
     
 0.497
ROP_09810
Hypothetical membrane protein.
  
 
 0.481
ROP_26070
Hypothetical protein.
  
 
 0.481
ROP_62870
Hypothetical membrane protein.
  
 
 0.481
ROP_64030
Putative anti-sigma factor.
  
 
 0.481
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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