STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_03280Hypothetical protein. (235 aa)    
Predicted Functional Partners:
ROP_03290
Hypothetical protein.
 
     0.974
ROP_03320
Hypothetical protein.
 
     0.973
gvpO
Putative gas vesicle synthesis protein GvpO.
 
     0.970
gvpS
Putative gas vesicle synthesis protein GvpS.
 
     0.968
gvpJ
Putative gas vesicle synthesis protein GvpJ; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
     0.966
gvpL
Putative gas vesicle synthesis protein GvpL.
 
     0.966
gvpF
Putative gas vesicle synthesis protein GvpF.
 
     0.949
gvpK
Putative gas vesicle synthesis protein GvpK.
 
     0.947
gvpA
Putative gas vesicle structural protein GvpA; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
     0.944
ROP_03790
Rod shape-determining protein/penicillin-binding protein; Bifunctional protein.
  
 
 0.899
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.