Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gvpSPutative gas vesicle synthesis protein GvpS. (69 aa)    
Predicted Functional Partners:
gvpO
Putative gas vesicle synthesis protein GvpO.
 
   
 0.975
gvpJ
Putative gas vesicle synthesis protein GvpJ; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.975
gvpK
Putative gas vesicle synthesis protein GvpK.
 
   
 0.975
gvpL
Putative gas vesicle synthesis protein GvpL.
 
   
 0.974
ROP_03280
Hypothetical protein.
 
     0.963
ROP_03320
Hypothetical protein.
 
   
 0.963
gvpF
Putative gas vesicle synthesis protein GvpF.
 
   
 0.955
gvpA
Putative gas vesicle structural protein GvpA; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.953
ROP_03290
Hypothetical protein.
 
     0.951
gvpF-2
Putative gas vesicle synthesis protein GvpF.
 
   
 0.810
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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