Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROP_03450Putative hydrolase. (267 aa)    
Predicted Functional Partners:
ROP_38460
Putative hydrolase.
  
     0.691
ROP_18200
Putative hydrolase.
  
     0.672
ROP_30790
Putative hydrolase.
  
     0.624
ROP_52040
Putative hydrolase.
  
     0.624
ROP_66960
Putative hydrolase.
  
     0.615
ROP_48110
Putative hydrolase.
  
     0.612
ROP_62750
Putative hydrolase.
  
     0.581
ROP_43530
Putative hydrolase.
  
     0.561
eph
Epoxide hydrolase.
  
     0.545
ROP_14280
Putative hydrolase.
  
     0.542
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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