Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROP_03480Hypothetical protein. (160 aa)    
Predicted Functional Partners:
ROP_03490
Putative MerR family transcriptional regulator.
 
   
 0.903
ROP_18770
Putative AAA family ATPase; Belongs to the AAA ATPase family.
  
 0.809
ROP_67960
Putative acetoin utilization protein.
  
 
 0.677
ROP_22200
Hypothetical protein.
  
 
 0.655
aqpZ
Putative aquaporin Z; Protein synonym:water channel; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.618
hisS
histidyl-tRNA synthetase; Protein synonym:HisRS; protein synonym:histidine--tRNA ligase.
   
 0.597
ROP_20220
Hypothetical protein.
   
 0.596
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
   
 
 0.558
ROP_07290
Hypothetical protein.
 
 
 0.537
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
   
   0.535
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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