Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROP_04440Putative ArsR family transcriptional regulator. (113 aa)    
Predicted Functional Partners:
ROP_04430
Hypothetical protein.
 
  
 0.978
ROP_55970
Putative ArsR family transcriptional regulator.
  
     0.706
ROP_27710
Hypothetical protein.
 
  
 0.673
ROP_66070
Putative ArsR family transcriptional regulator.
  
     0.671
ROP_52720
Putative ArsR family transcriptional regulator.
  
     0.655
ROP_40000
Putative ArsR family transcriptional regulator.
  
     0.598
ROP_41410
Putative ArsR family transcriptional regulator.
 
     0.544
ROP_68920
Hypothetical protein.
 
  
 0.465
ROP_04420
Hypothetical protein.
       0.464
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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