Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ROP_04480Putative drug resistance efflux protein. (395 aa)    
Predicted Functional Partners:
ROP_00110
Hypothetical membrane protein.
     
 0.797
ROP_12890
Putative fatty-acid--CoA ligase; Protein synonym:acyl-CoA synthetase.
      
 0.790
arsB
Putative arsenite resistance protein.
     
 0.611
arsB-3
Putative arsenite resistance protein.
     
 0.611
ROP_04470
Hypothetical protein.
       0.489
ROP_59470
Putative LuxR family transcriptional regulator.
  
   
 0.440
ROP_21160
Hypothetical protein.
  
  
 0.436
ROP_57740
Hypothetical protein.
  
  
 0.436
ROP_13650
Hypothetical protein.
   
    0.405
ROP_36370
Hypothetical protein.
   
    0.405
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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