STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_04550Putative flavin-containing amine oxidase. (456 aa)    
Predicted Functional Partners:
ROP_67960
Putative acetoin utilization protein.
  
 0.582
ROP_04540
Putative TetR family transcriptional regulator.
 
     0.560
ROP_00010
Hypothetical protein.
 
  
 0.512
ROP_04530
Flavin-containing amine oxidase.
 
    
0.502
ROP_11740
Putative helicase.
    
 0.500
ROP_12610
Putative helicase.
    
 0.500
ROP_13480
Putative helicase.
    
 0.500
crtB
Phytoene synthase.
 
  
 0.497
cyp51
Cytochrome P450 51; Protein synonym:CYP51; protein synonym:sterol 14-alpha demethylase; Belongs to the cytochrome P450 family.
 
 
 
 0.480
mprB
Two-component histidine kinase MprB.
 
  
 0.476
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.