STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_05300Hypothetical protein. (209 aa)    
Predicted Functional Partners:
ROP_57970
Hypothetical protein.
  
  
 0.785
ROP_55230
Putative protein-tyrosine kinase.
  
  
 0.775
ROP_54850
Putative glycosyltransferase.
  
  
 0.705
ROP_57980
Hypothetical membrane protein.
  
  
 0.527
ROP_30050
Hypothetical protein.
  
  
 0.519
ROP_36070
Hypothetical protein.
  
  
 0.519
ROP_39650
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.514
ROP_42870
Putative non-ribosomal peptide synthetase.
  
  
 0.474
ROP_55120
Putative acyltransferase.
  
  
 0.462
rmlD
dTDP-6-deoxy-L-lyxo-4-hexulose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.461
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.