STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_07010Hypothetical protein. (309 aa)    
Predicted Functional Partners:
ROP_07020
Hypothetical protein.
       0.783
ROP_07000
Hypothetical protein.
       0.539
ROP_66040
Hypothetical protein.
   
  
 0.472
secY
Preprotein translocase SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
 
 0.467
ROP_15260
Putative cation-transporting ATPase.
  
 
 0.462
ROP_36200
Putative calcium-transporting ATPase.
  
 
 0.462
ROP_50990
Putative cation-transporting ATPase.
  
 
 0.462
cya-3
Protein synonym:adenylyl cyclase.
 
     0.454
ROP_64500
Hypothetical membrane protein.
      
 0.442
ROP_41360
Hypothetical protein.
 
     0.431
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.