Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_03790 | ROP_08230 | ROP_03790 | ROP_08230 | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | Hypothetical protein. | 0.665 |
ROP_03790 | ftsI | ROP_03790 | ROP_08220 | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | Peptidoglycan synthase FtsI; Protein synonym:penicillin-binding protein; protein synonym:peptidoglycan glycosyltransferase. | 0.650 |
ROP_03790 | ftsQ | ROP_03790 | ROP_08140 | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | Putative cell division protein FtsQ; Essential cell division protein. | 0.987 |
ROP_03790 | ftsW | ROP_03790 | ROP_08170 | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | Cell division protein FtsW; Belongs to the SEDS family. | 0.659 |
ROP_03790 | mraW | ROP_03790 | ROP_08240 | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | Methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.683 |
ROP_03790 | mraZ | ROP_03790 | ROP_08250 | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | MraZ protein; Belongs to the MraZ family. | 0.574 |
ROP_03790 | murD | ROP_03790 | ROP_08180 | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.858 |
ROP_03790 | murE | ROP_03790 | ROP_08210 | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.811 |
ROP_08230 | ROP_03790 | ROP_08230 | ROP_03790 | Hypothetical protein. | Rod shape-determining protein/penicillin-binding protein; Bifunctional protein. | 0.665 |
ROP_08230 | ROP_39180 | ROP_08230 | ROP_39180 | Hypothetical protein. | Hypothetical protein. | 0.632 |
ROP_08230 | ROP_42510 | ROP_08230 | ROP_42510 | Hypothetical protein. | Hypothetical membrane protein. | 0.676 |
ROP_08230 | ftsI | ROP_08230 | ROP_08220 | Hypothetical protein. | Peptidoglycan synthase FtsI; Protein synonym:penicillin-binding protein; protein synonym:peptidoglycan glycosyltransferase. | 0.978 |
ROP_08230 | ftsQ | ROP_08230 | ROP_08140 | Hypothetical protein. | Putative cell division protein FtsQ; Essential cell division protein. | 0.929 |
ROP_08230 | ftsW | ROP_08230 | ROP_08170 | Hypothetical protein. | Cell division protein FtsW; Belongs to the SEDS family. | 0.681 |
ROP_08230 | mraW | ROP_08230 | ROP_08240 | Hypothetical protein. | Methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.938 |
ROP_08230 | mraZ | ROP_08230 | ROP_08250 | Hypothetical protein. | MraZ protein; Belongs to the MraZ family. | 0.833 |
ROP_08230 | murD | ROP_08230 | ROP_08180 | Hypothetical protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.657 |
ROP_08230 | murE | ROP_08230 | ROP_08210 | Hypothetical protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.663 |
ROP_39180 | ROP_08230 | ROP_39180 | ROP_08230 | Hypothetical protein. | Hypothetical protein. | 0.632 |
ROP_39180 | ROP_42510 | ROP_39180 | ROP_42510 | Hypothetical protein. | Hypothetical membrane protein. | 0.729 |
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