Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_08380 | ROP_08410 | ROP_08380 | ROP_08410 | Hypothetical protein. | Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA. | 0.738 |
ROP_08380 | ROP_24120 | ROP_08380 | ROP_24120 | Hypothetical protein. | Putative MarR family transcriptional regulator. | 0.617 |
ROP_08380 | ROP_39070 | ROP_08380 | ROP_39070 | Hypothetical protein. | Putative LytR family regulatory protein. | 0.618 |
ROP_08380 | ROP_50400 | ROP_08380 | ROP_50400 | Hypothetical protein. | Putative MarR family transcriptional regulator. | 0.628 |
ROP_08380 | ROP_66910 | ROP_08380 | ROP_66910 | Hypothetical protein. | Putative DtxR family transcriptional regulator. | 0.702 |
ROP_08380 | ROP_68420 | ROP_08380 | ROP_68420 | Hypothetical protein. | Hypothetical protein. | 0.660 |
ROP_08380 | cobB-2 | ROP_08380 | ROP_10310 | Hypothetical protein. | NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily. | 0.625 |
ROP_08380 | crgA | ROP_08380 | ROP_35080 | Hypothetical protein. | Hypothetical membrane protein; Involved in cell division; Belongs to the CrgA family. | 0.653 |
ROP_08380 | kdpE | ROP_08380 | ROP_09510 | Hypothetical protein. | Turgor pressure transcriptional regulator KdpE; Protein synonym:kdp operon response regulator. | 0.623 |
ROP_08380 | pknL | ROP_08380 | ROP_08390 | Hypothetical protein. | Protein synonym:protein kinase L. | 0.739 |
ROP_08410 | ROP_08380 | ROP_08410 | ROP_08380 | Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA. | Hypothetical protein. | 0.738 |
ROP_24120 | ROP_08380 | ROP_24120 | ROP_08380 | Putative MarR family transcriptional regulator. | Hypothetical protein. | 0.617 |
ROP_39070 | ROP_08380 | ROP_39070 | ROP_08380 | Putative LytR family regulatory protein. | Hypothetical protein. | 0.618 |
ROP_39070 | ROP_66910 | ROP_39070 | ROP_66910 | Putative LytR family regulatory protein. | Putative DtxR family transcriptional regulator. | 0.646 |
ROP_39070 | cobB-2 | ROP_39070 | ROP_10310 | Putative LytR family regulatory protein. | NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily. | 0.792 |
ROP_39070 | kdpE | ROP_39070 | ROP_09510 | Putative LytR family regulatory protein. | Turgor pressure transcriptional regulator KdpE; Protein synonym:kdp operon response regulator. | 0.753 |
ROP_50400 | ROP_08380 | ROP_50400 | ROP_08380 | Putative MarR family transcriptional regulator. | Hypothetical protein. | 0.628 |
ROP_66910 | ROP_08380 | ROP_66910 | ROP_08380 | Putative DtxR family transcriptional regulator. | Hypothetical protein. | 0.702 |
ROP_66910 | ROP_39070 | ROP_66910 | ROP_39070 | Putative DtxR family transcriptional regulator. | Putative LytR family regulatory protein. | 0.646 |
ROP_66910 | cobB-2 | ROP_66910 | ROP_10310 | Putative DtxR family transcriptional regulator. | NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily. | 0.716 |
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