STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_10480Putative acetyltransferase. (207 aa)    
Predicted Functional Partners:
pcaI
Putative 3-oxoadipate CoA-transferase alpha subunit; Protein synonym:beta-ketoadipate--succinyl-CoA transferase.
     
 0.644
pcaJ
Putative 3-oxoadipate CoA-transferase beta subunit; Protein synonym:beta-ketoadipate--succinyl-CoA transferase.
       0.626
ROP_10470
Putative ABC transporter substrate-binding protein.
     
 0.620
ROP_10460
Putative S9C family peptidase.
       0.563
ROP_62430
Peptidase M22 family protein.
  
 
 0.521
ROP_23180
Esterase.
 
    0.480
ROP_32360
Hypothetical protein.
 
  
 0.471
pcaH
Protocatechuate 3,4-dioxygenase beta subunit.
       0.448
pcaG
Protocatechuate 3,4-dioxygenase alpha subunit.
       0.448
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Protein synonym:3-carboxymuconate lactonizing enzyme.
     
 0.437
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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