STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_12710Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (107 aa)    
Predicted Functional Partners:
ROP_12700
Putative uric acid permease.
     
 0.783
ROP_31340
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.768
ROP_26660
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.766
ROP_31390
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.765
ROP_27270
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.762
ROP_12670
Hypothetical protein.
       0.760
ROP_12680
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
       0.760
ROP_26240
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.760
ROP_12690
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
       0.758
ROP_26110
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.758
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.