STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_12750Hypothetical protein. (153 aa)    
Predicted Functional Partners:
ROP_12740
Putative BenE family transporter.
       0.832
ROP_41550
Polyketide synthase.
  
 
 0.794
pks13
Protein synonym:type I polyketide synthase.
  
 
 0.691
fas1
Fatty-acid synthase I.
  
 
 0.681
ROP_19250
Putative non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.646
ROP_19230
Putative non-ribosomal peptide synthetase.
  
 
 0.612
ROP_12730
Hypothetical protein.
       0.578
fabD
Protein synonym:[acyl-carrier-protein] S-malonyltransferase.
  
 
 0.577
ROP_70090
Putative polyketide synthase.
  
 
 0.555
ROP_02610
Putative non-ribosomal peptide synthetase.
  
 
 0.526
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.