STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_15970Hypothetical membrane protein. (189 aa)    
Predicted Functional Partners:
ROP_15960
Hypothetical protein.
 
     0.939
mce3F
Putative Mce family protein.
 
  
 0.791
mce3D
Putative Mce family protein.
 
  
 0.782
mce3A
Putative Mce family protein.
 
  
 0.781
mce5A
Putative Mce family protein.
 
  
 0.778
mce3E
Putative Mce family protein.
 
  
 0.777
mce5E
Putative Mce family protein.
 
  
 0.768
mce3C
Putative Mce family protein.
 
  
 0.766
ROP_46840
Hypothetical membrane protein.
  
     0.764
ROP_15950
Hypothetical protein.
       0.762
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.