STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_16160Hypothetical protein. (567 aa)    
Predicted Functional Partners:
fadE-4
acyl-CoA dehydrogenase.
 
  
 0.958
ROP_16170
Hypothetical protein.
 
     0.953
accD
acyl-CoA carboxylase beta chain; Protein synonym:carboxyltransferase.
 
  
 0.952
accA
acyl-CoA carboxylase alpha chain; Protein synonym:biotin carboxylase/biotin carboxyl carrier protein.
 
  
 0.945
fadE-5
acyl-CoA dehydrogenase.
 
  
 0.927
ROP_16100
Putative TetR family transcriptional regulator.
 
   
 0.926
ROP_16110
Putative enoyl-CoA hydratase.
 
  
 0.920
ROP_53060
Hypothetical protein.
 
     0.752
ROP_20230
Putative dioxygenase.
  
 
 0.728
ROP_41490
Putative acyl-CoA carboxylase.
  
  
 0.698
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.