Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_06300 | ROP_16900 | ROP_06300 | ROP_16900 | Putative Usp family protein. | Hypothetical protein. | 0.700 |
ROP_06300 | lao | ROP_06300 | ROP_16910 | Putative Usp family protein. | L-amino acid oxidase. | 0.418 |
ROP_13750 | ROP_16900 | ROP_13750 | ROP_16900 | Hypothetical protein. | Hypothetical protein. | 0.516 |
ROP_13750 | ROP_16920 | ROP_13750 | ROP_16920 | Hypothetical protein. | Putative amino acid transporter. | 0.562 |
ROP_16900 | ROP_06300 | ROP_16900 | ROP_06300 | Hypothetical protein. | Putative Usp family protein. | 0.700 |
ROP_16900 | ROP_13750 | ROP_16900 | ROP_13750 | Hypothetical protein. | Hypothetical protein. | 0.516 |
ROP_16900 | ROP_16920 | ROP_16900 | ROP_16920 | Hypothetical protein. | Putative amino acid transporter. | 0.616 |
ROP_16900 | ROP_16930 | ROP_16900 | ROP_16930 | Hypothetical protein. | Putative IclR family transcriptional regulator. | 0.468 |
ROP_16900 | ROP_61270 | ROP_16900 | ROP_61270 | Hypothetical protein. | Hypothetical protein. | 0.523 |
ROP_16900 | fusA | ROP_16900 | ROP_16050 | Hypothetical protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.473 |
ROP_16900 | fusA-2 | ROP_16900 | ROP_59490 | Hypothetical protein. | Elongation factor G; Protein synonym:EF-G. | 0.473 |
ROP_16900 | lao | ROP_16900 | ROP_16910 | Hypothetical protein. | L-amino acid oxidase. | 0.931 |
ROP_16900 | rph | ROP_16900 | ROP_11410 | Hypothetical protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.480 |
ROP_16900 | tatA-2 | ROP_16900 | ROP_16890 | Hypothetical protein. | Twin-arginine translocation protein TatA/E family protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.843 |
ROP_16920 | ROP_13750 | ROP_16920 | ROP_13750 | Putative amino acid transporter. | Hypothetical protein. | 0.562 |
ROP_16920 | ROP_16900 | ROP_16920 | ROP_16900 | Putative amino acid transporter. | Hypothetical protein. | 0.616 |
ROP_16920 | ROP_16930 | ROP_16920 | ROP_16930 | Putative amino acid transporter. | Putative IclR family transcriptional regulator. | 0.821 |
ROP_16920 | ROP_61270 | ROP_16920 | ROP_61270 | Putative amino acid transporter. | Hypothetical protein. | 0.436 |
ROP_16920 | lao | ROP_16920 | ROP_16910 | Putative amino acid transporter. | L-amino acid oxidase. | 0.543 |
ROP_16920 | tatA-2 | ROP_16920 | ROP_16890 | Putative amino acid transporter. | Twin-arginine translocation protein TatA/E family protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.474 |
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