STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_18520Putative short-chain fatty acid transporter. (479 aa)    
Predicted Functional Partners:
ROP_37890
Putative short-chain fatty acid transporter.
  
  
 
0.902
ROP_18510
Hypothetical protein.
       0.676
ROP_18530
Urea carboxylase.
       0.590
ROP_18540
Allophanate hydrolase.
       0.590
ROP_18490
Putative ABC transporter ATP-binding protein.
  
    0.435
glpQ
Putative glycerophosphoryl diester phosphodiesterase.
      
 0.426
pcaI
Putative 3-oxoadipate CoA-transferase alpha subunit; Protein synonym:beta-ketoadipate--succinyl-CoA transferase.
 
  
 0.419
scoA
succinyl-CoA--3-ketoacid CoA-transferase alpha subunit.
 
  
 0.418
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.