STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psdPhosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). (237 aa)    
Predicted Functional Partners:
pssA
Phosphatidylserine synthase; Protein synonym:CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
 
 0.999
plc
Phospholipase C.
     
  0.900
ROP_18770
Putative AAA family ATPase; Belongs to the AAA ATPase family.
  
  
 0.881
ROP_14260
Oxidoreductase.
     
 0.812
ROP_14830
Choline oxidase.
     
 0.812
ROP_15550
Choline oxidase.
     
 0.812
ROP_21200
Putative L-sorbose dehydrogenase.
     
 0.812
ROP_35800
Oxidoreductase.
     
 0.812
ROP_61370
Putative oxidoreductase.
     
 0.812
ROP_28570
Putative oxidoreductase.
    
 0.804
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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