Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ROP_19730Putative Rrf2 family DNA-binding protein. (157 aa)    
Predicted Functional Partners:
hmp
Flavohemoprotein; Protein synonym:flavohemoglobin; protein synonym:nitric oxide dioxygenase; Belongs to the globin family.
 
   
 0.970
iscS
Cysteine desulfurase.
  
  
 0.726
ROP_19720
Putative Usp family protein.
 
  
 0.662
iscU
Putative iron-sulfur cluster assembly protein IscU.
  
  
 0.561
arsC-3
Arsenate reductase; Belongs to the ArsC family.
 
  
 0.529
ROP_45510
Hypothetical protein.
  
  
 0.496
iscA
Putative iron-sulfur cluster assembly protein IscA; Belongs to the HesB/IscA family.
  
  
 0.468
ROP_19700
Putative Usp family protein.
  
  
 0.407
ROP_52840
Putative oxidoreductase.
 
  
 0.402
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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