Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hmpFlavohemoprotein; Protein synonym:flavohemoglobin; protein synonym:nitric oxide dioxygenase; Belongs to the globin family. (393 aa)    
Predicted Functional Partners:
ROP_19730
Putative Rrf2 family DNA-binding protein.
 
   
 0.970
soxD
Sarcosine oxidase delta subunit.
  
  
 0.820
ROP_18720
Hypothetical protein.
  
  
 0.741
ROP_38140
Hypothetical protein.
  
  
 0.741
ROP_50930
Hypothetical protein.
  
  
 0.741
ROP_25700
Oxidoreductase.
 
  
 0.615
cbs
Cystathionine beta-synthase.
  
  
 0.595
ROP_20910
Putative oxidase.
     
 0.582
ROP_25470
Oxidoreductase.
 
  
 0.560
ROP_19720
Putative Usp family protein.
     
 0.531
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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