Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_09060 | ROP_09070 | ROP_09060 | ROP_09070 | Ribonuclease H/acid phosphatase; Bifunctional protein. | Hypothetical protein. | 0.988 |
ROP_09060 | ROP_09080 | ROP_09060 | ROP_09080 | Ribonuclease H/acid phosphatase; Bifunctional protein. | Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | 0.958 |
ROP_09060 | ROP_52680 | ROP_09060 | ROP_52680 | Ribonuclease H/acid phosphatase; Bifunctional protein. | Hypothetical protein. | 0.417 |
ROP_09060 | polA | ROP_09060 | ROP_07190 | Ribonuclease H/acid phosphatase; Bifunctional protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.703 |
ROP_09060 | rnhA | ROP_09060 | ROP_19840 | Ribonuclease H/acid phosphatase; Bifunctional protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.929 |
ROP_09060 | rnhB | ROP_09060 | ROP_65960 | Ribonuclease H/acid phosphatase; Bifunctional protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.841 |
ROP_09060 | topA | ROP_09060 | ROP_42630 | Ribonuclease H/acid phosphatase; Bifunctional protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.600 |
ROP_09060 | uvrD2 | ROP_09060 | ROP_64430 | Ribonuclease H/acid phosphatase; Bifunctional protein. | ATP-dependent DNA helicase UvrD2. | 0.636 |
ROP_09070 | ROP_09060 | ROP_09070 | ROP_09060 | Hypothetical protein. | Ribonuclease H/acid phosphatase; Bifunctional protein. | 0.988 |
ROP_09070 | ROP_09080 | ROP_09070 | ROP_09080 | Hypothetical protein. | Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | 0.965 |
ROP_09070 | rnhA | ROP_09070 | ROP_19840 | Hypothetical protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.564 |
ROP_09080 | ROP_09060 | ROP_09080 | ROP_09060 | Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Ribonuclease H/acid phosphatase; Bifunctional protein. | 0.958 |
ROP_09080 | ROP_09070 | ROP_09080 | ROP_09070 | Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Hypothetical protein. | 0.965 |
ROP_09080 | polA | ROP_09080 | ROP_07190 | Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.710 |
ROP_09080 | rnhA | ROP_09080 | ROP_19840 | Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.693 |
ROP_19830 | ROP_19850 | ROP_19830 | ROP_19850 | Hypothetical protein. | Hypothetical protein. | 0.486 |
ROP_19830 | rnhA | ROP_19830 | ROP_19840 | Hypothetical protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.667 |
ROP_19850 | ROP_19830 | ROP_19850 | ROP_19830 | Hypothetical protein. | Hypothetical protein. | 0.486 |
ROP_19850 | polA | ROP_19850 | ROP_07190 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.513 |
ROP_19850 | rnhA | ROP_19850 | ROP_19840 | Hypothetical protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.736 |
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