STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_19880Putative ABC transporter permease protein. (254 aa)    
Predicted Functional Partners:
ROP_19860
Hypothetical membrane protein.
 
 0.999
ROP_19870
Hypothetical membrane protein.
 
 0.999
ROP_19890
Putative ABC transporter ATP-binding protein.
 0.999
ROP_53030
Putative ABC transporter ATP-binding protein.
 
 
 0.919
ROP_52960
BioY family protein.
  
 
 0.785
ROP_53000
BioY family protein.
  
 
 0.785
ROP_04360
Putative ABC transporter ATP-binding protein.
  
 
 0.640
ROP_19350
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.640
ROP_28510
Putative ABC transporter ATP-binding protein.
  
 
 0.640
ROP_42460
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.640
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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