STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_20910Putative oxidase. (495 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.923
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
  
 
 0.922
hmuO
Putative heme oxygenase.
    
 0.921
ftn
Putative ferritin; Iron-storage protein.
   
 
 0.914
ftn-2
Putative ferritin; Iron-storage protein.
   
 
 0.914
ROP_04290
Putative cysteine synthase; Protein synonym:O-acetylserine (thiol)-lyase; protein synonym:O-acetylserine sulfhydrylase.
  
  
 0.810
ROP_51160
Putative two-component histidine kinase.
  
 
 0.794
ROP_51170
Hypothetical membrane protein.
  
 
 0.794
ROP_30560
Hypothetical protein.
 
  
 0.768
ROP_45130
Putative MFS transporter.
  
  
 0.739
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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