Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_21920 | ROP_21930 | ROP_21920 | ROP_21930 | Hypothetical protein. | Hypothetical protein. | 0.537 |
ROP_21920 | ROP_48720 | ROP_21920 | ROP_48720 | Hypothetical protein. | Hypothetical membrane protein. | 0.550 |
ROP_21920 | ROP_60800 | ROP_21920 | ROP_60800 | Hypothetical protein. | Hypothetical protein. | 0.530 |
ROP_21920 | ROP_70130 | ROP_21920 | ROP_70130 | Hypothetical protein. | Hypothetical membrane protein. | 0.547 |
ROP_21920 | ROP_70140 | ROP_21920 | ROP_70140 | Hypothetical protein. | Hypothetical protein. | 0.640 |
ROP_21920 | efp | ROP_21920 | ROP_69260 | Hypothetical protein. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.536 |
ROP_21920 | gluQ | ROP_21920 | ROP_41070 | Hypothetical protein. | glutamyl-Q-tRNA(Asp) synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. | 0.559 |
ROP_21920 | guaA | ROP_21920 | ROP_62620 | Hypothetical protein. | GMP synthetase; Catalyzes the synthesis of GMP from XMP. | 0.494 |
ROP_21920 | metH | ROP_21920 | ROP_05970 | Hypothetical protein. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.509 |
ROP_21920 | rplD | ROP_21920 | ROP_61870 | Hypothetical protein. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.498 |
ROP_21930 | ROP_21920 | ROP_21930 | ROP_21920 | Hypothetical protein. | Hypothetical protein. | 0.537 |
ROP_48720 | ROP_21920 | ROP_48720 | ROP_21920 | Hypothetical membrane protein. | Hypothetical protein. | 0.550 |
ROP_48720 | efp | ROP_48720 | ROP_69260 | Hypothetical membrane protein. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.700 |
ROP_48720 | guaA | ROP_48720 | ROP_62620 | Hypothetical membrane protein. | GMP synthetase; Catalyzes the synthesis of GMP from XMP. | 0.530 |
ROP_48720 | rplD | ROP_48720 | ROP_61870 | Hypothetical membrane protein. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.816 |
ROP_60800 | ROP_21920 | ROP_60800 | ROP_21920 | Hypothetical protein. | Hypothetical protein. | 0.530 |
ROP_70130 | ROP_21920 | ROP_70130 | ROP_21920 | Hypothetical membrane protein. | Hypothetical protein. | 0.547 |
ROP_70130 | ROP_70140 | ROP_70130 | ROP_70140 | Hypothetical membrane protein. | Hypothetical protein. | 0.975 |
ROP_70140 | ROP_21920 | ROP_70140 | ROP_21920 | Hypothetical protein. | Hypothetical protein. | 0.640 |
ROP_70140 | ROP_70130 | ROP_70140 | ROP_70130 | Hypothetical protein. | Hypothetical membrane protein. | 0.975 |
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