STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_22980Glycerate kinase family protein. (241 aa)    
Predicted Functional Partners:
glxR
Protein synonym:tartronate semialdehyde reductase.
 
 
 0.955
ROP_08690
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
  
 
0.923
gyaR
Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.914
ROP_27000
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
  
 
0.912
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.908
ROP_24070
Putative oxidoreductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.904
alc
Allantoicase; Protein synonym:allantoate amidinohydrolase; Belongs to the allantoicase family.
       0.790
ROP_22950
Allantoinase.
  
  
 0.709
pcd
Piperideine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.684
ROP_17840
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.684
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.