STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_23910Hypothetical protein. (284 aa)    
Predicted Functional Partners:
ROP_23920
Putative TetR family transcriptional regulator.
 
   
 0.805
ROP_63290
Putative TetR family transcriptional regulator.
 
   
 0.684
ROP_18510
Hypothetical protein.
 
     0.616
ROP_54410
Putative TetR family transcriptional regulator.
 
   
 0.598
ROP_51250
Hypothetical protein.
  
     0.581
ROP_51100
Hypothetical protein.
  
     0.524
ROP_63820
Putative TetR family transcriptional regulator.
  
   
 0.508
ROP_22610
Putative TetR family transcriptional regulator.
  
   
 0.494
ROP_06790
Putative fatty-acid--CoA ligase; Protein synonym:acyl-CoA synthetase.
 
     0.484
ROP_54650
Putative CDF family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.472
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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