STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_25450Hypothetical protein. (127 aa)    
Predicted Functional Partners:
ROP_25480
Hypothetical protein.
 
     0.952
ROP_25460
Hypothetical protein.
 
     0.945
ROP_25470
Oxidoreductase.
 
     0.908
ROP_25490
Putative TetR family transcriptional regulator.
       0.718
ROP_25500
Hypothetical protein.
       0.680
ROP_25270
Hypothetical protein.
  
     0.656
eutC
Ethanolamine ammonia-lyase small subunit; Belongs to the EutC family.
 
  
 0.620
ROP_30300
Hypothetical protein.
  
     0.615
ROP_46210
Extradiol dioxygenase.
  
     0.614
ROP_30200
Hypothetical protein.
  
     0.603
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.