STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_25510Hypothetical protein. (182 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.623
ROP_47420
Putative GntR family transcriptional regulator.
 
  
 0.498
amt
Ammonium transporter.
       0.493
ROP_14490
Putative NCS1 family transporter; Belongs to the purine-cytosine permease (2.A.39) family.
 
    0.476
ROP_23130
Putative histidine ammonia-lyase; Protein synonym:histidase.
 
  
 0.453
hutH
Histidine ammonia-lyase; Protein synonym:histidase.
 
  
 0.446
ROP_47400
Putative NCS1 family transporter; Belongs to the purine-cytosine permease (2.A.39) family.
 
    0.418
ROP_01060
Putative NCS1 family transporter; Belongs to the purine-cytosine permease (2.A.39) family.
 
    0.406
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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