STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_25550Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (495 aa)    
Predicted Functional Partners:
ROP_43870
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.934
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 
 0.926
ROP_60750
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.926
poxB
Protein synonym:pyruvate oxidase; Belongs to the TPP enzyme family.
  
 0.922
ROP_52640
Putative FMN-dependent dehydrogenase.
 
 
 0.920
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
    
 0.911
puo
Putrescine oxidase.
    
 0.910
acyP
Acylphosphatase; Protein synonym:acylphosphate phosphohydrolase.
    
 0.910
ROP_67820
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.910
ROP_21280
Short-chain acyl-CoA transferase; Belongs to the 3-oxoacid CoA-transferase family.
    
 0.907
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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