STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_28580Oxidoreductase. (271 aa)    
Predicted Functional Partners:
ROP_28590
Hypothetical protein.
  
  0.841
ROP_28560
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.831
ROP_28610
Putative acyl-CoA dehydrogenase.
  
 0.824
ROP_50470
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.810
ROP_28570
Putative oxidoreductase.
     
 0.789
ROP_28600
Hypothetical protein; Belongs to the CoA-transferase III family.
   
 
 0.777
fas1
Fatty-acid synthase I.
  
 0.728
ROP_47940
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.705
ROP_71520
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.687
ROP_58520
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.677
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.