Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_03750 | ROP_28800 | ROP_03750 | ROP_28800 | Hypothetical protein. | Peptidase M48 family protein. | 0.486 |
ROP_03750 | grpE | ROP_03750 | ROP_01560 | Hypothetical protein. | GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] | 0.762 |
ROP_03750 | grpE-2 | ROP_03750 | ROP_55730 | Hypothetical protein. | GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] | 0.756 |
ROP_17340 | ROP_28800 | ROP_17340 | ROP_28800 | Putative MerR family transcriptional regulator. | Peptidase M48 family protein. | 0.437 |
ROP_28800 | ROP_03750 | ROP_28800 | ROP_03750 | Peptidase M48 family protein. | Hypothetical protein. | 0.486 |
ROP_28800 | ROP_17340 | ROP_28800 | ROP_17340 | Peptidase M48 family protein. | Putative MerR family transcriptional regulator. | 0.437 |
ROP_28800 | ROP_48720 | ROP_28800 | ROP_48720 | Peptidase M48 family protein. | Hypothetical membrane protein. | 0.456 |
ROP_28800 | ROP_61140 | ROP_28800 | ROP_61140 | Peptidase M48 family protein. | Hypothetical membrane protein. | 0.480 |
ROP_28800 | ROP_69350 | ROP_28800 | ROP_69350 | Peptidase M48 family protein. | Hypothetical protein. | 0.447 |
ROP_28800 | ROP_72520 | ROP_28800 | ROP_72520 | Peptidase M48 family protein. | Hypothetical protein. | 0.478 |
ROP_28800 | ftsH | ROP_28800 | ROP_43230 | Peptidase M48 family protein. | ATP-dependent protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.545 |
ROP_28800 | grpE | ROP_28800 | ROP_01560 | Peptidase M48 family protein. | GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] | 0.454 |
ROP_28800 | grpE-2 | ROP_28800 | ROP_55730 | Peptidase M48 family protein. | GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] | 0.454 |
ROP_28800 | pimB | ROP_28800 | ROP_08500 | Peptidase M48 family protein. | Mannosyltransferase PimB'. | 0.436 |
ROP_48720 | ROP_28800 | ROP_48720 | ROP_28800 | Hypothetical membrane protein. | Peptidase M48 family protein. | 0.456 |
ROP_48720 | ROP_69350 | ROP_48720 | ROP_69350 | Hypothetical membrane protein. | Hypothetical protein. | 0.729 |
ROP_48720 | ftsH | ROP_48720 | ROP_43230 | Hypothetical membrane protein. | ATP-dependent protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.451 |
ROP_61140 | ROP_28800 | ROP_61140 | ROP_28800 | Hypothetical membrane protein. | Peptidase M48 family protein. | 0.480 |
ROP_69350 | ROP_28800 | ROP_69350 | ROP_28800 | Hypothetical protein. | Peptidase M48 family protein. | 0.447 |
ROP_69350 | ROP_48720 | ROP_69350 | ROP_48720 | Hypothetical protein. | Hypothetical membrane protein. | 0.729 |
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