STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_29230Hypothetical protein. (102 aa)    
Predicted Functional Partners:
ROP_29210
Branched-chain amino acid export protein large subunit.
       0.697
ROP_29220
Branched-chain amino acid export protein small subunit.
       0.697
ROP_29250
Hypothetical protein.
 
     0.520
ROP_29200
Putative AsnC family transcriptional regulator.
       0.502
ROP_39140
Hypothetical protein.
  
     0.439
ROP_50490
Hypothetical membrane protein.
  
     0.430
ROP_29240
Hypothetical protein.
       0.427
ROP_29190
Hypothetical protein.
       0.414
ROP_13500
Hypothetical protein.
 
     0.406
ROP_38730
Hypothetical membrane protein.
  
     0.403
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.